master-thesis/lab-windows/dsss_experiments.ipynb
2020-02-16 18:28:10 +00:00

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17 KiB
Text

{
"cells": [
{
"cell_type": "code",
"execution_count": 1,
"metadata": {},
"outputs": [],
"source": [
"from matplotlib import pyplot as plt\n",
"import numpy as np\n",
"from scipy import signal as sig\n",
"import struct\n",
"\n",
"import colorednoise\n",
"\n",
"np.set_printoptions(linewidth=240)"
]
},
{
"cell_type": "code",
"execution_count": 2,
"metadata": {},
"outputs": [],
"source": [
"%matplotlib widget"
]
},
{
"cell_type": "code",
"execution_count": 3,
"metadata": {},
"outputs": [],
"source": [
"#colorednoise.powerlaw_psd_gaussian(1, int(1e4))"
]
},
{
"cell_type": "code",
"execution_count": 4,
"metadata": {},
"outputs": [],
"source": [
"# From https://github.com/mubeta06/python/blob/master/signal_processing/sp/gold.py\n",
"preferred_pairs = {5:[[2],[1,2,3]], 6:[[5],[1,4,5]], 7:[[4],[4,5,6]],\n",
" 8:[[1,2,3,6,7],[1,2,7]], 9:[[5],[3,5,6]], \n",
" 10:[[2,5,9],[3,4,6,8,9]], 11:[[9],[3,6,9]]}\n",
"\n",
"def gen_gold(seq1, seq2):\n",
" print(seq1.shape, seq2.shape)\n",
" gold = [seq1, seq2]\n",
" for shift in range(len(seq1)):\n",
" gold.append(seq1 ^ np.roll(seq2, -shift))\n",
" return gold\n",
"\n",
"def gold(n):\n",
" n = int(n)\n",
" if not n in preferred_pairs:\n",
" raise KeyError('preferred pairs for %s bits unknown' % str(n))\n",
" t0, t1 = preferred_pairs[n]\n",
" (seq0, _st0), (seq1, _st1) = sig.max_len_seq(n, taps=t0), sig.max_len_seq(n, taps=t1)\n",
" return gen_gold(seq0, seq1)"
]
},
{
"cell_type": "code",
"execution_count": 16,
"metadata": {},
"outputs": [
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"Canvas(toolbar=Toolbar(toolitems=[('Home', 'Reset original view', 'home', 'home'), ('Back', 'Back to previous …"
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"text": [
"(31,) (31,)\n"
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"data": {
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"<matplotlib.image.AxesImage at 0x7fe4abaf7490>"
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"execution_count": 16,
"metadata": {},
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],
"source": [
"fig, ax = plt.subplots()\n",
"ax.matshow(gold(5))"
]
},
{
"cell_type": "code",
"execution_count": 17,
"metadata": {},
"outputs": [],
"source": [
"def modulate(data, nbits=5, code=29):\n",
" # 0, 1 -> -1, 1\n",
" mask = gold(nbits)[code]*2 - 1\n",
" \n",
" # same here\n",
" data_centered = (data*2 - 1)\n",
" return (mask[:, np.newaxis] @ data_centered[np.newaxis, :] + 1).T.flatten() //2"
]
},
{
"cell_type": "code",
"execution_count": 18,
"metadata": {},
"outputs": [],
"source": [
"def correlate(sequence, nbits=5, code=29, decimation=1, mask_filter=lambda x: x):\n",
" # 0, 1 -> -1, 1\n",
" mask = mask_filter(np.repeat(gold(nbits)[code]*2 -1, decimation))\n",
" # center\n",
" sequence -= np.mean(sequence)\n",
" return np.correlate(sequence, mask, mode='full')"
]
},
{
"cell_type": "code",
"execution_count": 19,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"(31,) (31,)\n"
]
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"data": {
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"version_major": 2,
"version_minor": 0
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"text/plain": [
"Canvas(toolbar=Toolbar(toolitems=[('Home', 'Reset original view', 'home', 'home'), ('Back', 'Back to previous …"
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"output_type": "display_data"
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"(31,) (31,)\n"
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"source": [
"foo = modulate(np.array([0, 1, 0, 0, 1, 1, 1, 0])).astype(float)\n",
"fig, ax = plt.subplots()\n",
"ax.plot(correlate(foo))"
]
},
{
"cell_type": "code",
"execution_count": 20,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"(31,) (31,)\n"
]
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"version_minor": 0
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"text/plain": [
"Canvas(toolbar=Toolbar(toolitems=[('Home', 'Reset original view', 'home', 'home'), ('Back', 'Back to previous …"
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},
"metadata": {},
"output_type": "display_data"
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"(31,) (31,)\n",
"(31,) (31,)\n"
]
},
{
"data": {
"text/plain": [
"(2.0, 1.0490216904842018)"
]
},
"execution_count": 20,
"metadata": {},
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],
"source": [
"decimation = 10\n",
"signal_amplitude = 2.0\n",
"nbits = 5\n",
"\n",
"foo = np.repeat(modulate(np.array([0, 1, 0, 0, 1, 1, 1, 0]), nbits) * 2.0 - 1, decimation) * signal_amplitude\n",
"noise = colorednoise.powerlaw_psd_gaussian(1, len(foo))\n",
"\n",
"sosh = sig.butter(4, 0.01, btype='highpass', output='sos', fs=decimation)\n",
"sosl = sig.butter(6, 1.0, btype='lowpass', output='sos', fs=decimation)\n",
"filtered = sig.sosfilt(sosh, sig.sosfilt(sosl, foo + noise))\n",
"#filtered = sig.sosfilt(sosh, foo + noise)\n",
"\n",
"fig, ((ax1, ax3), (ax2, ax4)) = plt.subplots(2, 2, figsize=(16, 9))\n",
"fig.tight_layout()\n",
"\n",
"ax1.plot(foo + noise)\n",
"ax1.plot(foo)\n",
"ax1.set_title('raw')\n",
"\n",
"ax2.plot(filtered)\n",
"ax2.plot(foo)\n",
"ax2.set_title('filtered')\n",
"\n",
"ax3.plot(correlate(foo + noise, nbits=nbits, decimation=decimation))\n",
"ax3.set_title('corr raw')\n",
" \n",
"ax3.grid()\n",
"\n",
"ax4.plot(correlate(filtered, nbits=nbits, decimation=decimation))\n",
"ax4.set_title('corr filtered')\n",
"ax4.grid()\n",
"\n",
"rms = lambda x: np.sqrt(np.mean(np.square(x)))\n",
"rms(foo), rms(noise)"
]
},
{
"cell_type": "code",
"execution_count": 21,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"mean: 49.98625\n"
]
}
],
"source": [
"with open('/mnt/c/Users/jaseg/shared/raw_freq.bin', 'rb') as f:\n",
" mains_noise = np.copy(np.frombuffer(f.read(), dtype='float32'))\n",
" print('mean:', np.mean(mains_noise))\n",
" mains_noise -= np.mean(mains_noise)"
]
},
{
"cell_type": "code",
"execution_count": 22,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"(63,) (63,)\n",
"(63,) (63,)\n",
"(63,) (63,)\n",
"(63,) (63,)\n"
]
},
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"version_major": 2,
"version_minor": 0
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"text/plain": [
"Canvas(toolbar=Toolbar(toolitems=[('Home', 'Reset original view', 'home', 'home'), ('Back', 'Back to previous …"
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"data": {
"text/plain": [
"(0.002, 0.012591236)"
]
},
"execution_count": 22,
"metadata": {},
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],
"source": [
"decimation = 10\n",
"signal_amplitude = 2.0e-3\n",
"nbits = 6\n",
"\n",
"foo = np.repeat(modulate(np.array([0, 1, 0, 0, 1, 1, 1, 0]), nbits) * 2.0 - 1, decimation) * signal_amplitude\n",
"noise = np.resize(mains_noise, len(foo))\n",
"\n",
"sosh = sig.butter(3, 0.01, btype='highpass', output='sos', fs=decimation)\n",
"sosl = sig.butter(3, 0.8, btype='lowpass', output='sos', fs=decimation)\n",
"#filtered = sig.sosfilt(sosh, sig.sosfilt(sosl, foo + noise))\n",
"filtered = sig.sosfilt(sosh, foo + noise)\n",
"\n",
"cor1 = correlate(foo + noise, nbits=nbits, decimation=decimation)\n",
"cor2 = correlate(filtered, nbits=nbits, decimation=decimation)\n",
"\n",
"cor2_pe = correlate(filtered, nbits=nbits, decimation=decimation, mask_filter=lambda mask: sig.sosfilt(sosh, sig.sosfiltfilt(sosl, mask)))\n",
"\n",
"sosn = sig.butter(12, 4, btype='highpass', output='sos', fs=decimation)\n",
"#cor1_flt = sig.sosfilt(sosn, cor1)\n",
"#cor2_flt = sig.sosfilt(sosn, cor2)\n",
"#cor1_flt = cor1[1:] - cor1[:-1]\n",
"#cor2_flt = cor2[1:] - cor2[:-1]\n",
"\n",
"fig, ((ax1, ax3, ax5), (ax2, ax4, ax6)) = plt.subplots(2, 3, figsize=(16, 9))\n",
"fig.tight_layout()\n",
"\n",
"ax1.plot(foo + noise)\n",
"ax1.plot(foo)\n",
"ax1.set_title('raw')\n",
"\n",
"ax2.plot(filtered)\n",
"ax2.plot(foo)\n",
"ax2.set_title('filtered')\n",
"\n",
"ax3.plot(cor1)\n",
"ax3.set_title('corr raw')\n",
"ax3.grid()\n",
"\n",
"ax4.plot(cor2)\n",
"ax4.set_title('corr filtered')\n",
"ax4.grid()\n",
"\n",
"#ax5.plot(cor1_flt)\n",
"#ax5.set_title('corr raw (highpass)')\n",
"#ax5.grid()\n",
"\n",
"#ax6.plot(cor2_flt)\n",
"#ax6.set_title('corr filtered (highpass)')\n",
"#ax6.grid()\n",
"\n",
"ax6.plot(cor2_pe)\n",
"ax6.set_title('corr filtered w/ mask preemphasis')\n",
"ax6.grid()\n",
"\n",
"rms = lambda x: np.sqrt(np.mean(np.square(x)))\n",
"rms(foo), rms(noise)"
]
},
{
"cell_type": "code",
"execution_count": 23,
"metadata": {},
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"Canvas(toolbar=Toolbar(toolitems=[('Home', 'Reset original view', 'home', 'home'), ('Back', 'Back to previous …"
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"name": "stdout",
"output_type": "stream",
"text": [
"(63,) (63,)\n"
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],
"source": [
"fig, ax = plt.subplots()\n",
"\n",
"seq = np.repeat(gold(6)[29]*2 -1, decimation)\n",
"sosh = sig.butter(3, 0.01, btype='highpass', output='sos', fs=decimation)\n",
"sosl = sig.butter(3, 0.8, btype='lowpass', output='sos', fs=decimation)\n",
"seq_filtered = sig.sosfilt(sosh, sig.sosfiltfilt(sosl, seq))\n",
"#seq_filtered = sig.sosfilt(sosh, seq)\n",
"\n",
"ax.plot(seq)\n",
"ax.plot(seq_filtered)"
]
},
{
"cell_type": "code",
"execution_count": 24,
"metadata": {},
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"Canvas(toolbar=Toolbar(toolitems=[('Home', 'Reset original view', 'home', 'home'), ('Back', 'Back to previous …"
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"metadata": {},
"output_type": "display_data"
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"name": "stdout",
"output_type": "stream",
"text": [
"(63,) (63,)\n"
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],
"source": [
"fig, axs = plt.subplots(3, 1, figsize=(9, 7), sharex=True)\n",
"fig.tight_layout()\n",
"axs = axs.flatten()\n",
"for ax in axs:\n",
" ax.grid()\n",
"\n",
"seq = np.repeat(gold(6)[29]*2 -1, decimation)\n",
"sosh = sig.butter(3, 0.1, btype='highpass', output='sos', fs=decimation)\n",
"sosl = sig.butter(3, 0.8, btype='lowpass', output='sos', fs=decimation)\n",
"cor2_pe_flt = sig.sosfilt(sosh, cor2_pe)\n",
"cor2_pe_flt2 = sig.sosfilt(sosh, sig.sosfiltfilt(sosl, cor2_pe))\n",
"\n",
"axs[0].plot(cor2_pe)\n",
"axs[1].plot(cor2_pe_flt)\n",
"axs[2].plot(cor2_pe_flt2)\n",
"\n",
"#for idx in np.where(np.abs(cor2_pe_flt2) > 0.5)\n"
]
},
{
"cell_type": "code",
"execution_count": 49,
"metadata": {},
"outputs": [
{
"name": "stderr",
"output_type": "stream",
"text": [
"<ipython-input-49-9776d553457e>:5: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (`matplotlib.pyplot.figure`) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam `figure.max_open_warning`).\n",
" fig, (ax1, ax2, ax3) = plt.subplots(3, figsize=(12, 12))\n"
]
},
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"interactive(children=(FloatSlider(value=10.0, description='w', max=30.0, min=-10.0), Output()), _dom_classes=(…"
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"execution_count": 49,
"metadata": {},
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],
"source": [
"threshold_factor = 5.0\n",
"\n",
"import ipywidgets\n",
"\n",
"cor_an = cor1\n",
"\n",
"fig, (ax1, ax2, ax3) = plt.subplots(3, figsize=(12, 12))\n",
"fig.tight_layout()\n",
"\n",
"ax1.matshow(sig.cwt(cor_an, sig.ricker, np.arange(1, 31)), aspect='auto')\n",
"\n",
"for i in np.linspace(1, 10, 19):\n",
" offx = 5*i\n",
" ax2.plot(sig.cwt(cor_an, sig.ricker, [i]).flatten() + offx, color='red')\n",
"\n",
" ax2.text(-50, offx, f'{i:.1f}',\n",
" horizontalalignment='right',\n",
" verticalalignment='center',\n",
" color='black')\n",
"ax2.grid()\n",
"\n",
"ax3.grid()\n",
"\n",
"cwt_res = sig.cwt(cor_an, sig.ricker, [7.3]).flatten()\n",
"line, = ax3.plot(cwt_res)\n",
"def update(w=10.0):\n",
" line.set_ydata(sig.cwt(cor_an, sig.ricker, [w]).flatten())\n",
" fig.canvas.draw_idle()\n",
"ipywidgets.interact(update)\n",
"\n",
"import itertools\n",
"th = np.convolve(np.abs(cwt_res), np.ones((500,))/500, mode='same')\n",
"peaks = [ list(group) for val, group in itertools.groupby(enumerate(zip(th, cwt_res)), lambda elem: abs(elem[1][1]) > elem[1][0]*threshold_factor) if val ]\n",
"for group in peaks:\n",
" pos = np.mean([idx for idx, _val in group])\n",
" pol = np.mean([val for _idx, (_th, val) in group])\n",
" ax3.axvline(pos, color='red', alpha=0.5)\n",
" ax3.text(pos-20, 2.0, f'{0 if pol < 0 else 1}', horizontalalignment='right', verticalalignment='center', color='black')\n",
" \n",
"ax3.plot(th)"
]
},
{
"cell_type": "code",
"execution_count": 27,
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],
"source": [
"fig, axs = plt.subplots(2, 1, figsize=(9, 7))\n",
"fig.tight_layout()\n",
"axs = axs.flatten()\n",
"for ax in axs:\n",
" ax.grid()\n",
" \n",
"axs[0].plot(cor2_pe_flt2[1::10] - cor2_pe_flt2[:-1:10])\n",
"a, b = cor2_pe_flt2[1::10] - cor2_pe_flt2[:-1:10], np.array([0.0, -0.5, 1.0, -0.5, 0.0])\n",
"axs[1].plot(np.convolve(a, b, mode='full'))"
]
}
],
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